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FungusTreeNetwork

Source: R/FungusTreeNetwork.R
FungusTreeNetwork.Rd

fungus-tree interaction network

This data set provides information about $154$ fungi sampled on $51$ tree species. Composed of nodes and edges lists build based on `sbm` data package.

Usage

FungusTreeNetwork

Format

A list of the following entries:

networks

  • tree_names: (character) tree names

  • fungus_names: (character) fungus names

  • tree_tree

    1. nodes: data.frame describing nodes of tree_tree network

    2. edges: data.frame describing edges of tree_tree network

    3. type: this network is "unipartite"

  • fungus_tree

    1. nodes: data.frame describing nodes of fungus_tree network

    2. edges: data.frame describing edges of fungus_tree network

    3. type: this network is "bipartite"

sbmResults

  • tree_treeResults of estimateSimpleSBM for sbm applied on tree_tree data with a Poisson model.

  • fungus_treeResults of estimateBipartiteSBM for sbm applied on fungus_tree data with a Bernoulli model.

Source

Vacher, Corinne, Dominique Piou, and Marie-Laure Desprez-Loustau. "Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history." PloS one 3.3 (2008): e1740.